As Dagon continues his attack on the Argo, Derek Wildstar tries to locate the Galman base. He discovers that Galman ships, not satellites, are reflecting the lasers toward the Argo, and launches an attack on them. The Cosmo Tigers provide additional support, destroying the ships. Derek locates the relay stations and orders a surprise attack. Dagon launches a proton missile at the Argo, but the Star Force fires the Wave Motion Gun, destroying both the missile and the base.
Dr. Sane tries his best to save the old man rescued from the planet, but is unsuccessful. Derek then learns that the woman he rescued from the planet is four months pregnant and decides to send all the women on the ship, except for Nova, back to Earth.
To make the needed repairs to the Argo, Avatar orders the battleship to sail for the asteroid belt remains of Minerva, the 10th planet in the Solar System – the first to have been destroyed by the Gamilons. To hide the battleship from Gamilon radar detection, Sandor devises a plan to cover the hull with asteroid fragments. Meanwhile, Colonel Ganz orders his fleet to locate and destroy the Argo. When the Gamilon fleet loses track of the Star Force, Ganz initially suspects the Earthlings of performing a space warp. But when his crew locate the Argo in the asteroid field, he seizes the opportunity to attack. To repel the Gamilon fleet, Sandor advises Avatar to reverse the polarity of the magnetized asteroid fragments covering the ship. This results in the creation of a defensive asteroid ring that blocks incoming Gamilon fire. When the Gamilon fleet closes in on the Argo, the battleship releases the revolving asteroid fragments, causing them to scatter in all directions. In their attempt to avoid being struck by the fragments, most of the Gamilon ships end up colliding with each other, resulting in the destruction of the fleet. Although its escorts are destroyed, Ganz's flagship is undamaged, and lurches directly toward the Argo on a collision course. To prevent the two ships from colliding, the Argo fires a rocket anchor into the Gamilon commander's ship, knocking it off course just enough to narrowly avoid impact. Ganz's flagship then careens into an asteroid and explodes.
Earth has 338 days left.
With the Argo the only ship in the Earth Defense Force remaining, the Star Force returns to the ship and hurries to make repairs. Sandor has the Argo land at the Ganymede base on Jupiter. Wildstar, who is recovering from his injuries, wakes up in a bed in the infirmary. When IQ-9 tells him about what happened to the Andromeda and how the repairs are going, he tries to get up, but Nova has IQ-9 forcibly return the captain to his bed. Dr. Sane also orders him to get some rest.
On Earth, news of the Earth Defense Force's defeat at Saturn, as well as the Argo's disappearance, causes mass panic among the population. Zordar demands the Earth's unconditional surrender and, in a show of force, uses his primary battery ring of cannons to reduce the Moon to a molten mass. To avoid being annihilated, the Earth is forced to comply. Upon hearing of the Earth's decision, Wildstar pulls himself out of bed and addresses his crew, rallying them to fight. With all repairs completed, the Argo blasts off for Earth.
Sandor and Homer travel to Earth with Major Cranshaw, one of Desslok's scientists. After meeting the Earth Defense Force's commander, Cranshaw takes one ship to Saturn while Sandor and Homer follow in a second ship. Sandor explains the plan: first, Cranshaw will launch specially designed missiles to form a magnetic shield around the sun. Then Sandor's group will launch special missiles to gather asteroid fragments and send them into the sun. Finally, Cranshaw will launch proton missiles, and the resulting reaction will return the sun to normal.
At first, the plan appears to succeed, with the sun's temperature falling, but it then rapidly rises, forcing both ships to immediately retreat. Humiliated by the failure, Cranshaw orders his men to abandon his ship, then commits suicide by flying it into the sun.
Derek and Nova offer their condolences to Desslok on the loss of Major Cranshaw. Desslok wishes Derek and Nova success on their mission. As Derek and Nova leave, they see several of Queen Guardiana's worshippers. Derek asks Desslok about the worshippers, and Desslok simply says Galman does not need two gods. He then tells the Star Force about another planet – Phantom – which is similar to Earth and supposedly uninhabited.
153 days remain before the sun destroys Earth.
When the Argo picks up an unidentified spaceship, Commander Wildstar orders all hands to their battle stations. He makes radio contact with the spaceship, which identifies itself as the Legendra, says it is heavily damaged, and requests time to make repairs. After consulting with the Earth Defense Force's commander, Wildstar gives the Legendra 24 hours to make repairs and offers to provide any necessary supplies. He meets with the Legendra's captain, Captain Ram of the planet Berth, who tells him about their war with the Galman Empire.
Just then, one fleet of the Galman's Eastern Task Force appears. Sandor recognizes the ships as the same type they fought just before the Argo left Earth. General Dagon, the Galman commander in command of the fleet, demands the Legendra, but Ram negotiates more time with Dagon and completes repairs. However, just as Ram leaves the Argo, Dagon orders an attack on both ships. Wildstar launches a counterattack, plunging the Argo into the middle of the war.
326 days remain before the sun destroys Earth.
As the Star Force reunites to honor Captain Avatar's memory, Derek Wildstar says that he scouted what he thinks is a new and potentially very powerful and dangerous enemy. He then goes to the Andromeda and confronts Captain Gideon, who turns out to be one of his former instructors, about the near-miss in space. Gideon says that even though the Argo had landing priority as a returning spaceship, it still would have had to yield to the Andromeda because the latter was Earth's highest-ranking starship. Despite Wildstar's protests, Gideon simply tells him he will "learn the hard way".
Wildstar leaves Gideon's quarters along with former crewmate Sandor, who gives him a tour of the Andromeda, saying how computerized the ship is. When Wildstar asks about the radio message, Sandor plays it back; although mostly garbled, it appears to contain a woman's voice. Wildstar asks about the improvements to the Argo, and Sandor mentions that the Earth Defense Force wants the Argo just as computerized as the Andromeda. The news upsets Wildstar, who confronts the Earth Defense Council's commander, just as a massive blackout occurs.
On board the Comet Empire, which was responsible for the blackout, Desslok tells Zordar that the Star Force will head to Telezart once they decipher Trelaina's message. Zordar puts Desslok in charge of handling Trelaina and the Star Force.
In the late 22nd century, an alien race known as the Gamilons have attacked the Earth, bombarding it with radioactive bombs and forcing the population underground. However, the radiation is seeping into the planet; unless it's removed, Earth will become uninhabitable in one year. War with the Gamilons has also destroyed the Earth's space forces except for two ships – the Paladin, commanded by Alex Wildstar, and another ship, commanded by Captain Avatar. During a battle at Pluto, Avatar's ship is damaged. The Paladin gives Avatar's ship enough time to escape, but is destroyed in the process. This event becomes a major motivator for Derek Wildstar throughout the series.
Meanwhile, a non-Gamilon alien ship is hit in the crossfire and crashes on Mars. Cadets Derek Wildstar, Alex's younger brother, and Mark Venture investigate and discover a beautiful, dead woman, ejected from the escape pod and clutching a message capsule. They return to Earth in Avatar's battleship, and Derek notices the absence of any other ships. On the way back, they learn of Alex's fate. After they return, Derek confronts Avatar about Alex, but Avatar says it was Alex's decision to remain.
When the message capsule is decoded, it contains a message from Queen Starsha of planet Iscandar. Starsha says the messenger was her sister, Astra, and offers Earth the Cosmo DNA, a device which can remove the radioactivity. The message also contains plans for an advanced propulsion technology, dubbed the Wave Motion Engine, capable of faster-than-light travel. As the Earth Defense Command deliberates, a Gamilon recon plane is detected sniffing around the ruins of the sunken World War II battleship, the Yamato. Out of sheer boredom, Wildstar and Venture take a plane out (unauthorized) to investigate. However, the Yamato appears to be nothing more than a hunk of ruins, leaving the cadets puzzled as to why Gamilon would be interested in it.
After briefly changing course following damage from the destruction of Telezart, the Comet Empire resumes its course to Earth. Mark Venture pushes the Star Force crew excessively hard for getting to Earth more quickly, in hopes of validating Trelaina's apparent sacrifice. An armada from the Comet Empire advances on the Milky Way, and Captain Gideon gathers the Earth's fleet at Saturn without seeking permission from the Earth Defense Force command. General Stone worries that the Earth is left defenseless if Gideon's plan is unsuccessful.
On the Comet Empire flagship, Desslok grabs a guard's gun and takes Princess Invidia prisoner. He and Gamilon General Talan escape from the Comet Empire ship (leaving Invidia behind) and return to the Gamilon fleet. Prince Zordar figures out that Invidia and General Dire lied to him, so he returns Desslok's flagship to him. Desslok orders the Gamilon fleet to pursue the Star Force.
The Star Force approaches Beta in the Scalageck Star Cluster, the last possible planet the Argo is scheduled to survey. Although the planet is uninhabitable, the crew discovers the remains of the United States spaceship Arizona, which was apparently attacked by the Bolar Federation.
Just then, both a Galman and a Bolar fleet materialize and both demand Queen Mariposa. Derek refuses, ordering Flash to look after Mariposa. Meanwhile, Desslok orders the Galmans to defend the Argo. The Bolar fleet attacks the Argo, which – along with the Galmans – returns fire. Several ships are destroyed, along with that of the Galmans' fleet commander, Admiral Gustaf.
The Bolar main fleet radios the Argo, again demanding Mariposa. Derek refuses, and the Bolars attack. Using asteroids for cover, the Argo launches a counterattack with its wave cartridges, finally ending the battle. Flash begs Queen Guardiana for help, prompting Mariposa to help by inviting the Argo to Guardiana. Even though the Star Force did not find a second Earth, Derek decides on one final mission – to take Mariposa to Guardiana.
51 days remain before the sun destroys Earth.
Approaching planet Phantom, the Star Force notices that it looks just like Earth. The ship erupts into near-chaos as the crew celebrates. Initial surveys indicate the planet is almost exactly like Earth in every way. Commander Wildstar relays the discovery of Phantom to Earth and Desslok, intending to send a landing party to investigate further.
Suddenly, IQ-9 tells Derek that there is danger on Phantom, but can not pinpoint exactly what it is. Without any details, Derek orders the landing party to proceed. Meanwhile, Desslok contacts Belmayze and warns him to leave the Argo alone, but Belmayze refuses.
On Phantom's surface, the Argo's crew suddenly see people that either died or they had left behind. Jason, Flash and Nova see their parents, Derek sees Captain Avatar, and Sandor sees Derek's brother Alex and Queen Starsha of Iscandar. Just then the entire crew sees Avatar's memorial, and they wonder if what they are seeing are real or merely illusions.
118 days remain before the sun destroys Earth.